Resources

Code and documentation that are used in the NBR Course can be found on this page as well as new resources developed by NBR investigators.

Index

Use the tables below to find the slides for your topic.

RECOVER Adult

Content Slide Number
redcap_event_name Week 5 Lab, Slide 15
Dates and study visits Week 5 Lab, Slide 16
Schedule of Assessments Week 5 Lab, Slide 22
Form Descriptions Week 5 Lab, Slide 24
Example CONSORT Diagram Week 7 Lab, Slide 4
Infection Status Week 7 Lab, Slide 6
Common Exclusions & Missingness Week 7 Lab, Slide 12
Symptoms & Long COVID Research Index Week 7 Lab, Slide 19
Demographics and SDOH Week 9 Lab, Slide 3
Medications Week 9 Lab, Slide 19
Vaccination Status Week 9 Lab, Slide 22
Comorbidities Week 9 Lab, Slide 30
Labs Week 9 Lab, Slide 43

RECOVER Pediatrics

Content Slide Number
General notes Week 6 Lab, Slide 5
Variable notes Week 6 Lab, Slide 6
Date variables Week 6 Lab, Slide 9
Extant Cohorts Information (MUSIC and ABCD) Week 6 Lab, Slide 13
Caregiver Cohort Information Week 6 Lab, Slide 14
Schedule of assessments Week 6 Lab, Slide 16
Form descriptions Week 6 Lab, Slide 20
Pediatric Code Week 6 Lab, Slide 24
Example consort diagram Week 8 Lab, Slide 4
Antibody Testing Week 8 Lab, Slide 6
Common Exclusions Week 8 Lab, Slide 8
Symptom Analysis Week 8 Lab, Slide 22
LC Research Index Week 8 Lab, Slide 42
Demographics & SDOH Week 9 Lab, Slide 14
Vaccination Status Week 9 Lab, Slide 25
Current Child Health Week 9 Lab, Slide 35
Special Healthcare Needs Week 9 Lab, Slide 37
Labs Week 9 Lab, Slide 43

Pregnancy

Content Slide Number
redcap_event_name Week 5 Lab, Slide 15
Dates and study visits Week 5 Lab, Slide 16
Schedule of Assessments Week 5 Lab, Slide 22
Form Descriptions Week 5 Lab, Slide 24
Example CONSORT Diagram Week 7 Lab, Slide 4
Infection Status Week 7 Lab, Slide 6
Common Exclusions & Missingness Week 7 Lab, Slide 12
Symptoms & Long COVID Research Index Week 7 Lab, Slide 19
Demographics and SDOH Week 9 Lab, Slide 3
Medications Week 9 Lab, Slide 19
Vaccination Status Week 9 Lab, Slide 22
Comorbidities Week 9 Lab, Slide 30
Labs Week 9 Lab, Slide 43

Congenital

Content Slide Number
Data overview Week 10 Lab, Slide 3
Congenital exposure Week 10 Lab, Slide 5
Study visits Week 10 Lab, Slide 6
Parent's data Week 10 Lab, Slide 6
ASQ Assessment Week 10 Lab, Slide 14
Common Exclusions Week 10 Lab, Slide 18

REDCap

Content Slide Number
General REDCap variable notes – variable formatting Week 5 Lab, Slide 4
Categorical Variables Week 5 Lab, Slide 7
Multi-select/checkbox questions and example Week 5 Lab, Slide 8
Branching logic example Week 5 Lab, Slide 11

Seven Bridges & RStudio

Content Slide Number
What is Git? Week 11, Slide 2
Repo Setup Week 11 Lab, Slide 3
Important scripts for getting started with the data Week 5 Lab, Slide 27
Helpful functions from helper scripts Week 5 Lab, Slide 29
Setup script workflow and useful datasets Week 5 Lab, Slide 32
Loading RDS objects Week 5 Lab, Slide 38